RP-HPLC purity analysis from $150 with LC-MS identity confirmation
A step-by-step guide from an independent peptide testing lab: reverse-phase HPLC-UV at 214 nm plus LC-MS confirmation, 0.1% impurity detection, and a third-party COA in 9-11 business days. Ship from anywhere in the U.S.
Last reviewed
How to Test Peptides: The HPLC + Mass Spec Method
To test peptides for purity, ACS runs reverse-phase HPLC with UV detection and confirms identity by LC-MS/MS. Methods are validated to ICH Q2(R1) and USP guidelines. Every report includes the chromatogram, calculated purity percentage, and an impurity profile down to 0.1%. This is the same peptide testing method used by pharmaceutical QC labs, delivered as an independent, third-party COA for compounding pharmacies, research institutions, and biotech companies across the United States.
HPLC Purity Analysis
High-resolution reverse-phase HPLC with UV detection for accurate peptide purity quantification. Typical detection limits of 0.1% for impurities with comprehensive chromatographic profiling.
LC-MS/MS Analysis
Liquid chromatography coupled with tandem mass spectrometry for detailed molecular characterization and identification of peptide impurities and degradation products.
What Our Purity Testing Includes
Percentage Purity Determination
Accurate quantification of target peptide purity using validated HPLC methods with multiple detection wavelengths
Impurity Profiling
Identification and characterization of deletion sequences, truncated peptides, and synthesis byproducts
Method Validation
All analytical methods validated according to ICH guidelines ensuring reproducibility and accuracy
Detailed Certificate of Analysis
Comprehensive report including chromatograms, mass spectra, purity percentage, and expert interpretation
Testing Capabilities
• Purity range detection: 50-99.9%
• Impurity detection limit: 0.1%
• Peptide size: Small to large polypeptides
• Sample requirement: 100-500 μg
• Turnaround time: 9-11 business days
Peptide Purity Testing Method Specification
These are the actual parameters behind every purity percentage we report. Method conditions are adjusted per peptide (hydrophobicity, length, salt form), but the framework below applies to standard research peptides and GLP-1 analogs alike.
Peptide purity testing method parameters at ACS Peptide Testing Labs
C18, 5 um, typically 4.6 x 250 mm; C4 or C8 for highly hydrophobic peptides
Mobile phase
Water/acetonitrile gradient with 0.1% TFA or formic acid ion pairing
Purity calculation
Target peak area / total integrated peak area x 100 (area percent)
Impurity detection limit
0.1% of total peak area; reporting range 50%-99.9%
Identity confirmation
LC-MS / ESI-MS molecular weight match against theoretical mass
Method basis
Validated in line with ICH Q2(R1) and USP <621> chromatography principles
Sample required
100-500 ug lyophilized powder, or 1 mL of reconstituted solution
Price and turnaround
From $150 per sample; 9-11 business days from receipt
How to Read Your Peptide Purity Result
A purity percentage on its own does not tell you whether material is fit for use. Read it alongside the impurity profile and the identity confirmation.
How to interpret HPLC peptide purity percentages
HPLC purity
What it usually means
99%+
Clean synthesis and good purification. Typical target for compounding-grade and reference material.
98-99%
Standard for reputable research peptides. Minor synthesis-related peaks near the main peak.
95-98%
Usable for many research applications, but impurities should be identified before quantitative work.
Below 95%
Visible secondary peaks. Commonly incomplete coupling, deletion sequences, or degradation in transit or storage.
High purity, wrong mass
A pure compound that is not your peptide. Only LC-MS identity confirmation catches this.
Can You Test Peptide Purity at Home?
No. Purity is a chromatographic measurement, so it cannot be produced without an HPLC system, a validated gradient, and a reference standard. Home checks tell you something about the material, but not its purity:
Reconstitution and clarity: a cloudy or slow-dissolving vial suggests aggregation or excess salt, but a clear solution says nothing about purity.
Cake appearance and net weight: a collapsed or sticky lyophilized cake points to moisture uptake. Weight discrepancies point to net content problems, not impurities.
Supplier COA review: useful, but a manufacturer certificate reports the manufacturer's own result. Independent verification is the only way to confirm it.
No kit measures peptide purity. The products sold as peptide purity testing kits or peptide test kits are reconstitution and reagent color checks. They can flag an obviously wrong substance, but they cannot separate your peptide from deletion sequences, truncated chains, acetate or TFA salt, or residual solvent, and they never return a percentage you can put on a certificate.
Reagent and color kits: presence-or-absence screening only. No quantitation, no impurity profile, no identity confirmation.
A peptide purity test in a lab: RP-HPLC at 214 nm against a reference standard, integrated chromatogram, impurities reported to 0.1%, and LC-MS identity on the same report.
Cost comparison: a kit runs $20-$60 and answers nothing definitively. A single mail-in purity test is $150 and produces the document a supplier, pharmacy, or reviewer will accept.
How Much Does Peptide Purity Testing Cost?
Peptide purity testing costs $150 per sample for RP-HPLC purity with a signed certificate of analysis. There is no minimum order and no membership, and the price does not change by state because every sample is analyzed at our single Florida laboratory. Adding identity, contaminant, or moisture testing to the same vial costs less than running the tests separately.
Peptide purity testing cost by test type
Test
What it answers
Price
HPLC purity
Percentage of target peptide vs. related impurities
From $150
Purity + LC-MS identity
Purity plus confirmation the mass matches the sequence
ACS Peptide Testing Labs provides peptide purity testing to researchers and companies in all 50 US states from our Florida laboratory. Simply ship your peptide sample overnight and receive your HPLC purity results electronically within 9–11 business days. Our nationwide peptide purity testing service reaches every US metro so you can access professional-grade analysis from anywhere.
Ship from Any State
Overnight FedEx/UPS from all 50 states to our Florida lab.
9–11 Day Results
Standard turnaround.
Digital COA Delivery
Comprehensive Certificate of Analysis delivered electronically.